Actually, the penetration flsahings look pretty good. The only thing I see, or maybe don't see (can't tell for sure) would be the football patches on the corners of the base flashing for the chimney. The bleed out is excessive and a problem. Roof granuales are not required, nor can the be added to the sheet surface in the field. They sometimes sprinkle loose granules into the bleed out of a granulated roof, but it is purely cosmetic. UV coating is not required either. Both of those are just upgrades. Smooth surfaced APP Mod Bit, like seen in the photo, typically come with a 10 manufacturers material warranty and surfaced (gran. or UV) have a 12 year...if the UV is reapplied when is degrades (ave. 4-6 years). Mod Bit is a fine product when installed properly and on the right structure. Problem is, we rarely see a good installation on the residential side. Commercial is a different story.